N-Stealth

N-Stealth : Web server scanner
N-Stealth is a commercial web server security scanner. It is generally updated more frequently than free web scanners such as Whisker/libwhisker and Nikto, but do take their web site with a grain of salt. The claims of “30,000 vulnerabilities and exploits” and “Dozens of vulnerability checks are added every day” are highly questionable. Also note that essentially all general VA tools such as Nessus, ISS Internet Scanner, Retina, SAINT, and Sara include web scanning components. They may not all be as up-to-date or flexible though. N-Stealth is Windows only and no source code is provided.

Watchfire AppScan

Watchfire AppScan : Commercial Web Vulnerability Scanner
AppScan provides security testing throughout the application development lifecycle, easing unit testing and security assurance early in the development phase. Appscan scans for many common vulnerabilities, such as cross site scripting, HTTP response splitting, parameter tampering, hidden field manipulation, backdoors/debug options, buffer overflows and more.

Acunetix WVS

Acunetix WVS : Commercial Web Vulnerability Scanner
Acunetix WVS automatically checks web applications for vulnerabilities such as SQL Injections, cross site scripting, arbitrary file creation/deletion, weak password strength on authentication pages. AcuSensor technology detects vulnerabilities which typical black box scanners miss. Acunetix WVS boasts a comfortable GUI, an ability to create professional security audit and compliance reports, and tools for advanced manual webapp testing.

Wikto

Wikto : Web Server Assessment Tool
Wikto is a tool that checks for flaws in webservers. It provides much the same functionality as Nikto but adds various interesting pieces of functionality, such as a Back-End miner and close Google integration. Wikto is written for the MS .NET environment and registration is required to download the binary and/or source code.

Burpsuite

Burpsuite : An integrated platform for attacking web applications
Burp suite allows an attacker to combine manual and automated techniques to enumerate, analyze, attack and exploit web applications. The various burp tools work together effectively to share information and allow findings identified within one tool to form the basis of an attack using another.

QualysGuard

QualysGuard : A web-based vulnerability scanner
Delivered as a service over the Web, QualysGuard eliminates the burden of deploying, maintaining, and updating vulnerability management software or implementing ad-hoc security applications. Clients securely access QualysGuard through an easy-to-use Web interface. QualysGuard features 5,000+ unique vulnerability checks, an Inference-based scanning engine, and automated daily updates to the QualysGuard vulnerability KnowledgeBase.

Whisker_libwhisker

Whisker/libwhisker : Rain.Forest.Puppy’s CGI vulnerability scanner and library
Libwhisker is a Perl module geared geared towards HTTP testing. It provides functions for testing HTTP servers for many known security holes, particularly the presence of dangerous CGIs. Whisker is a scanner that used libwhisker but is now deprecated in favor of Nikto which also uses libwhisker.

WebInspect

WebInspect : A Powerful Web Application Scanner
SPI Dynamics’ WebInspect application security assessment tool helps identify known and unknown vulnerabilities within the Web application layer. WebInspect can also help check that a Web server is configured properly, and attempts common web attacks such as parameter injection, cross-site scripting, directory traversal, and more.